image.png

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Outline¶

  • Focus on the Semantic Discovery and Knowledge Base backend components
  • Demonstrate mapping and linking of communities semantically
  • Integration of third party ontology and data
    • EU data infrastructure
  • Demo: Synthetic case study of the backend - linking materialsproject.org, EuroSciVoc and DOME 4.0!

Outline of the Steps¶

  • Load the ontology eco system - as basis for all data and knowldge!
  • Create fully semantic data sets (Tier1: compliant with DOME 4.0 data Set Ontology)
  • Demonstrate Visualisation and SparQL and python query

Note:¶

This work is largely based on D3.6, it extends SimPhoNy-Future into a new Package developed specifcally with DOME requirements in mind: Ontology_Manager, OntoVIS and sigraDB.

DomeDataSetfrom D3.6 is in /Users/adham/dev/dome/Ontology-matters/domeo/domeo.ttl

In [2]:
from ontology_manager.ontology_utils import OntologyManager # loading the DOME 4.0 Ontology Manager Package
from rdflib import Graph, URIRef, Namespace, Literal, BNode, collection
from rdflib.namespace import SKOS, RDF, RDFS, OWL
from datetime import date
In [3]:
from rdflib.extras.external_graph_libs import rdflib_to_networkx_multidigraph, rdflib_to_graphtool
import networkx as nx
import matplotlib.pyplot as plt
In [4]:
from ontodot.ontodot import vis, random_date_time, auto_bind_namespaces, printH, generate_uuid, generate_random_materialproject_id
from ontodot.ontodot import OntoVis
In [5]:
from types import SimpleNamespace # We use simple name spaces, it is a basis for the new SimPhpNy Future
import os, random
In [6]:
dome=SimpleNamespace() # This is equivalent to a *SimPhoNy lightweight session*

Load the DOME 4.0 ecosystem CORE ontology¶

In [7]:
dome.g=Graph(bind_namespaces="rdflib")  # We are using RDFLIB directly, without any wrappers on top of it for efficiency.
dome.ns=Namespace('https://dome40.eu/semantics/dome4.0_core#')
dome.path = "/Users/adham/dev/ontology/dome/Ontology-matters/"
dome.file='dome4.0_core_tbox.ttl'
In [8]:
dome.g.parse(os.path.join(dome.path, dome.file))
Out[8]:
<Graph identifier=N6973b87c13804d45832885c342b4caf8 (<class 'rdflib.graph.Graph'>)>

Visualise¶

We will be available in enhanced - interactive/modern form - on the front end with final release¶

In [9]:
vis(dome.g)
No description has been provided for this image

Load the Materials Informatics Ontology (MIO)¶

  • MIO is a new top level ontology compliant with EMMO but is optimised for practical applications
  • EMMO requires heavy use of reasoners as it is built on logic,
  • This poses heavy constraints on applications, as one has to deal with complex structures, e.g., composite complex classes requiring intensive inference in real time
  • MIO is simple and focuses on practical applications, especially for software engineering perspective
In [10]:
mio=Graph(bind_namespaces="rdflib")
mio.parse("/Users/adham/dev/ontology/ontology_manager/MIO/mio/mio.ttl")
Out[10]:
<Graph identifier=N3edc34ad292d44c0b4b7245278a635b9 (<class 'rdflib.graph.Graph'>)>

Visualise¶

In [11]:
vis(mio)
No description has been provided for this image

Advanced Visualisation and integration of ontology¶

We rely on RDFLIB like many other open source programs for RDF management, but augment it with additional tools both in house and external!

  • OntoVis, SimPhoNy-Future, Ontology Manager, SigraDB, OMI, are in house

Combine ontology from multiple resources and zoom into the data set with cross connections¶

In [12]:
# Using the power of RDFLIB it is easy to combine ontology: 
gc=dome.g+mio
# Using the new OntoVis: Visualisation and inspection is easy 
ovis = OntoVis(gc)
In [13]:
vis(ovis.zoom_in(URIRef("http://dome40.eu/semantics/dome4.0_core#data_set"), 2))
No description has been provided for this image

DOME 4.0 eco system supports all standard ontology¶

In [14]:
# these are bindings (RDFLIB) 
binds="""
@prefix domeES: <http://dome40.eu/semantics/dome4.0_core#> .
@prefix mio: <http://www.ddmd.io/mio/> .
@prefix dcat: <http://www.w3.org/ns/dcat#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix euroscivoc: <http://data.europa.eu/8mn/euroscivoc/> .
@prefix evmpo: <https://emmc.eu/semantics/evmpo/evmpo.ttl#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix http-meth: <http://www.w3.org/2011/http-methods#> .
@prefix msm: <http://iserve.kmi.open.ac.uk/ns/msm#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xs: <http://www.w3.org/2001/XMLSchema#> .
"""
In [15]:
nsbinds=auto_bind_namespaces(dome.g, binds)

g.bind(domeES, http://dome40.eu/semantics/dome4.0_core#)
g.bind(mio, http://www.ddmd.io/mio/)
g.bind(dcat, http://www.w3.org/ns/dcat#)
g.bind(dcterms, http://purl.org/dc/terms/)
g.bind(euroscivoc, http://data.europa.eu/8mn/euroscivoc/)
g.bind(evmpo, https://emmc.eu/semantics/evmpo/evmpo.ttl#)
g.bind(foaf, http://xmlns.com/foaf/0.1/)
g.bind(http-meth, http://www.w3.org/2011/http-methods#)
g.bind(msm, http://iserve.kmi.open.ac.uk/ns/msm#)
g.bind(owl, http://www.w3.org/2002/07/owl#)
g.bind(rdf, http://www.w3.org/1999/02/22-rdf-syntax-ns#)
g.bind(rdfs, http://www.w3.org/2000/01/rdf-schema#)
g.bind(skos, http://www.w3.org/2004/02/skos/core#)
g.bind(xs, http://www.w3.org/2001/XMLSchema#)
In [16]:
print(nsbinds)

{'domeES': Namespace('http://dome40.eu/semantics/dome4.0_core#'), 'mio': Namespace('http://www.ddmd.io/mio/'), 'dcat': Namespace('http://www.w3.org/ns/dcat#'), 'dcterms': Namespace('http://purl.org/dc/terms/'), 'euroscivoc': Namespace('http://data.europa.eu/8mn/euroscivoc/'), 'evmpo': Namespace('https://emmc.eu/semantics/evmpo/evmpo.ttl#'), 'foaf': Namespace('http://xmlns.com/foaf/0.1/'), 'http-meth': Namespace('http://www.w3.org/2011/http-methods#'), 'msm': Namespace('http://iserve.kmi.open.ac.uk/ns/msm#'), 'owl': Namespace('http://www.w3.org/2002/07/owl#'), 'rdf': Namespace('http://www.w3.org/1999/02/22-rdf-syntax-ns#'), 'rdfs': Namespace('http://www.w3.org/2000/01/rdf-schema#'), 'skos': Namespace('http://www.w3.org/2004/02/skos/core#'), 'xs': Namespace('http://www.w3.org/2001/XMLSchema#')}

We create now a SimPhoNy-CUDS¶

  • CUDS: Common Universal/Unified Data Structures!
  • Check the MIO and domeES ontology!
In [17]:
cuds=SimpleNamespace() # we use now simple version, no checks for the demo of ontology types
cuds.g=Graph()
cuds_collection=set()
#cuds.ds=URIRef("http://dome40.eu/semantics/dome4.0_core#data_set")
In [18]:
num_data_sets=10 # the number of synthetic data sets we want to create
domeES=nsbinds['domeES']
mioNS=nsbinds['mio']
In [19]:
# Since this is a demo, we make our own creator, publisher, ... 
## Note we do not claim any relation to materials project by the following, this is merely a demon. 
# these will be instances later of a User/Dataproider etc. 
random_creator = lambda: random.choice(["Perosn 1", "Person 2", "Person 3", "Person 4", "Person 5"])  
# these will be instances later of a User/Dataproider etc. 
random_publisher = lambda: random.choice(["Company 1", "Company 2", "Company 3", "Company 4", "Company 5", "Nature Scientific Data", "MaterialsProject.prg"])  
random_keywords = lambda k: random.sample(s.split('\n'), random.randint(3, 6))

Let us use EuroSciVoc as True Semantic keywords!¶

and integrate with MIO+domeES ontology!¶

  • Load the EuroSciVoc ontology (mostly individuals, but with clear hierarchy)
  • Use SPARQL to pick all the concepts that are relevant for engineering and technology
  • for the demo: Make a function to select randomly 1 to 5 such semantic keywords, and add it to the dataset.

Attain practical and real compliance, and use of European Infrastrcutre and investments.¶

In [20]:
esvoc = SimpleNamespace()
esvoc.g = Graph()
esvoc.desc = "the EuroSciVoc"
esvoc.path = "/Users/adham/dev/dome/Ontology-matters/external/EuroSciVoc-skos-ap-eu_1.3.ttl" # Once we find and end point, we can get this from teh net directly. 
esvoc.g.parse(esvoc.path)
# SPARQL query to choose all elements narrower than engineering and technology. 
q="""
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>

SELECT ?narrowerConcept ?narrowerLabel 
WHERE {
    ?narrowerConcept skos:broader+ <http://data.europa.eu/8mn/euroscivoc/64605fff-1946-4fd4-b021-e2e83b71dcac> .
    ?narrowerConcept skos:prefLabel ?narrowerLabel .
        FILTER(LANGMATCHES(LANG(?narrowerLabel), "en"))
}
"""
# Noe the UUID may change between versions,  need to confirm!
In [21]:
# run the query 
esvoc.r = esvoc.g.query(q)
In [22]:
#for i in esvoc.r:
#    print(i)
printH(f" We find {len(esvoc.r)} semantic keywords relevant for technology and engineering")

 We find 208 semantic keywords relevant for technology and engineering:
=======================================================================
In [23]:
esvoc.r_formated = [{'IRI': str(row.narrowerConcept), 'Label': str(row.narrowerLabel)} for row in esvoc.r]
esvoc.random = lambda r: random.sample([[r_['IRI'], r_['Label']] for r_ in r], random.randint(2, 6))
for i in range(3):
    print(esvoc.random(esvoc.r_formated))

[['http://data.europa.eu/8mn/euroscivoc/c2a8caf5-4ee8-43ff-a3cd-bae7430e4e18', 'supercomputers'], ['http://data.europa.eu/8mn/euroscivoc/0085a6d1-0b32-479f-a560-0cbf6cffee9b', 'astronautical engineering'], ['http://data.europa.eu/8mn/euroscivoc/8d83b645-355f-4cf1-abf3-ce4cd3172c34', 'radio frequency'], ['http://data.europa.eu/8mn/euroscivoc/abadc19a-13ab-4bc6-951b-8f12226b3e8b', 'cognitive radio']]
[['http://data.europa.eu/8mn/euroscivoc/ece8d70d-2311-4d6d-ae12-473fc5c09a5d', 'sustainable architecture'], ['http://data.europa.eu/8mn/euroscivoc/e4062af9-fc49-4826-9bdb-e549f3f0f191', 'food technology'], ['http://data.europa.eu/8mn/euroscivoc/eeb88fa8-7b5a-440f-a3c9-add16c6b5cd2', 'mobile radio']]
[['http://data.europa.eu/8mn/euroscivoc/7b002931-b33d-4f72-87db-4ae7db02e938', 'bioleaching'], ['http://data.europa.eu/8mn/euroscivoc/c835a32d-04c8-493b-9644-203414287c92', 'composites'], ['http://data.europa.eu/8mn/euroscivoc/e4062af9-fc49-4826-9bdb-e549f3f0f191', 'food technology'], ['http://data.europa.eu/8mn/euroscivoc/53d318ec-2f1b-41e4-8317-24b35f9a9120', 'structural engineering'], ['http://data.europa.eu/8mn/euroscivoc/f08d8dbc-70a6-4d8c-8f83-62e58a17bf2d', 'food safety'], ['http://data.europa.eu/8mn/euroscivoc/7f86cf31-2001-4f17-8941-3318bb68bc21', 'marine energy']]
In [24]:
for i in range(1, num_data_sets + 1):
    cuds.ds = URIRef(f"{domeES}DS_{i}")
    cuds.uri = URIRef(f"{domeES}DS_{i}")
    cuds.g.add((cuds.ds, RDF.type, domeES.data_set))
    
    # Add the required DOME 4.0 Data Set Ontology attributes
    # These are cuds.add(spo triplet)
    # cuds.uri = URIRef(f"http://materialsproject.org/data/calc_{i}")

    mpid=generate_random_materialproject_id()
    #uri = URIRef("https://next-gen.materialsproject.org/materials/mp-19149")
    uri=URIRef(f"https://next-gen.materialsproject.org/materials/{mpid}")
    cuds.g.add( (uri, RDF.type, domeES.URI) ) 
    cuds.g.add((cuds.ds, domeES.hasPart, uri))
    
    printH(f"this is a DOME 4.0 Data Set: {cuds.ds}")
    printH(f"this Data Set point to: {uri}")

    wp = URIRef("https://next-gen.materialsproject.org/")
    cuds.g.add( (wp, RDF.type, domeES.web_platform) ) 
    cuds.g.add((cuds.ds, domeES.hasPart, wp))

    dc = URIRef(f"{domeES}/{generate_uuid()}")
    cuds.g.add( (dc, RDF.type, domeES.issued_date) )    
    the_date=Literal(random_date_time())
    cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
    cuds.g.add( (dc, mioNS.hasValue, the_date) ) 

    dc = URIRef(f"{domeES}/{generate_uuid()}")
    cuds.g.add( (dc, RDF.type, domeES.description) )    
    the_value=Literal("This is a description that will change later")
    cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
    cuds.g.add( (dc, mioNS.hasValue, the_value) )

    dc = URIRef(f"{domeES}/{generate_uuid()}")
    cuds.g.add( (dc, RDF.type, domeES.data_creator) )    
    the_value=Literal(random_creator())
    cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
    cuds.g.add( (dc, mioNS.hasValue, the_value) )

    dc = URIRef(f"{domeES}/{generate_uuid()}")
    cuds.g.add( (dc, RDF.type, domeES.license) )    
    the_value=Literal("CC-BY 4.0")
    cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
    cuds.g.add( (dc, mioNS.hasValue, the_value) )


    dc = URIRef(f"{domeES}/{generate_uuid()}")
    cuds.g.add( (dc, RDF.type, domeES.data_publisher) )    
    the_value=Literal(random_publisher())
    cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
    cuds.g.add( (dc, mioNS.hasValue, the_value) )

    dc = URIRef(f"{domeES}/{generate_uuid()}")
    cuds.g.add( (dc, RDF.type, domeES.title) )    
    the_value=Literal("this is a title placeholder")
    cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
    cuds.g.add( (dc, mioNS.hasValue, the_value) )


    # get some semantic EUROSCIVOC keywords for demo 
    ks=esvoc.random(esvoc.r_formated)
    for k in ks:
        print(k[1])
        dc = URIRef(k[0])
        cuds.g.add( (dc, RDF.type, domeES.semantic_keyword) )    
        cuds.g.add( (dc, RDFS.label, Literal(k[1]) ))    
        cuds.g.add( (cuds.ds, domeES.hasPart, dc) )
        
   # g.add((data_set_uri, mio.hasPart, domeES.syntactic_keyword))
    

this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_1:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-77:
==============================================================================
food safety
telecommunications
environmental biotechnology
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_2:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-91:
==============================================================================
other engineering and technologies
environmental engineering
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_3:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-27:
==============================================================================
computer hardware
architecture engineering
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_4:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-113:
===============================================================================
electrodialysis
civil engineering
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_5:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-75:
==============================================================================
solar thermal
electric power generation
geothermal energy
tidal energy
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_6:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-39:
==============================================================================
solar energy
fossil energy
natural gas
urban engineering
chemical process engineering
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_7:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-131:
===============================================================================
reverse osmosis
subtractive manufacturing
microtechnology
environmental engineering
drones
electronic engineering
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_8:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-84:
==============================================================================
fossil energy
urban engineering
geological engineering
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_9:
==========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-45:
==============================================================================
metabolic engineering
wearable medical technology 
this is a DOME 4.0 Data Set: http://dome40.eu/semantics/dome4.0_core#DS_10:
===========================================================================
this Data Set point to: https://next-gen.materialsproject.org/materials/mp-27:
==============================================================================
hydrogen energy
mechatronics
nanocrystals
radar
WiFi

Any data set (given as a IRI in general) can be a DOME 4.0 Data Set, this is simply achieved with the following line:¶

g.add((someURI, RDF.type, domeES.data_set))
In [25]:
gc=cuds.g+dome.g+mio
ovis = OntoVis(gc)
In [26]:
vis(ovis.zoom_in(URIRef("http://dome40.eu/semantics/dome4.0_core#DS_2"), 3))
No description has been provided for this image
In [27]:
inspect_iri=URIRef("http://dome40.eu/semantics/dome4.0_core#DS_2")
q="""
SELECT ?predicate ?object
WHERE {
    <http://dome40.eu/semantics/dome4.0_core#DS_2> ?predicate ?object .
}
"""
DS99 = Graph()
r=gc.query(q)
for i in r:
    DS99.add((inspect_iri, i.predicate, i.object))
    q2 = f"""
    SELECT ?predicate ?object
    WHERE {{
        <{i.object}> ?predicate ?object .
    }}
    """
    r2 = gc.query(q2)
    for j in r2:
        DS99.add((j.object, j.predicate, j.object))
        print(j.object, j.predicate, j.object)

http://dome40.eu/semantics/dome4.0_core#data_creator http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#data_creator
Perosn 1 http://www.ddmd.io/mio/hasValue Perosn 1
environmental engineering http://www.w3.org/2000/01/rdf-schema#label environmental engineering
http://dome40.eu/semantics/dome4.0_core#semantic_keyword http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#semantic_keyword
http://dome40.eu/semantics/dome4.0_core#title http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#title
this is a title placeholder http://www.ddmd.io/mio/hasValue this is a title placeholder
http://dome40.eu/semantics/dome4.0_core#data_publisher http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#data_publisher
Company 1 http://www.ddmd.io/mio/hasValue Company 1
http://dome40.eu/semantics/dome4.0_core#web_platform http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#web_platform
http://dome40.eu/semantics/dome4.0_core#description http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#description
This is a description that will change later http://www.ddmd.io/mio/hasValue This is a description that will change later
http://dome40.eu/semantics/dome4.0_core#URI http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#URI
http://dome40.eu/semantics/dome4.0_core#semantic_keyword http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#semantic_keyword
other engineering and technologies http://www.w3.org/2000/01/rdf-schema#label other engineering and technologies
CC-BY 4.0 http://www.ddmd.io/mio/hasValue CC-BY 4.0
http://dome40.eu/semantics/dome4.0_core#license http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#license
http://dome40.eu/semantics/dome4.0_core#issued_date http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#issued_date
2024-10-03T16:11:04.494639 http://www.ddmd.io/mio/hasValue 2024-10-03T16:11:04.494639
http://dome40.eu/semantics/dome4.0_core#web_platform http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#web_platform
http://dome40.eu/semantics/dome4.0_core#data_creator http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#data_creator
http://dome40.eu/semantics/dome4.0_core#syntactic_keyword http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#syntactic_keyword
http://dome40.eu/semantics/dome4.0_core#license http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#license
http://dome40.eu/semantics/dome4.0_core#name http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#name
http://dome40.eu/semantics/dome4.0_core#description http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#description
http://dome40.eu/semantics/dome4.0_core#issued_date http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#issued_date
http://dome40.eu/semantics/dome4.0_core#URI http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#URI
http://dome40.eu/semantics/dome4.0_core#data_publisher http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#data_publisher
http://dome40.eu/semantics/dome4.0_core#title http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#title
http://dome40.eu/semantics/dome4.0_core#semantic_keyword http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#semantic_keyword
A dome specific representation of a Semantic Data Set  http://www.w3.org/2000/01/rdf-schema#comment A dome specific representation of a Semantic Data Set 
http://www.ddmd.io/mio/SDS http://www.w3.org/2000/01/rdf-schema#subClassOf http://www.ddmd.io/mio/SDS
Dome Data Set http://www.w3.org/2000/01/rdf-schema#label Dome Data Set
http://www.w3.org/2002/07/owl#Class http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
In [28]:
for s, p, o in DS99:
    print(s, p, o)

Perosn 1 http://www.ddmd.io/mio/hasValue Perosn 1
this is a title placeholder http://www.ddmd.io/mio/hasValue this is a title placeholder
http://dome40.eu/semantics/dome4.0_core#issued_date http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#issued_date
http://dome40.eu/semantics/dome4.0_core#URI http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#URI
http://dome40.eu/semantics/dome4.0_core#name http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#name
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart https://next-gen.materialsproject.org/
other engineering and technologies http://www.w3.org/2000/01/rdf-schema#label other engineering and technologies
2024-10-03T16:11:04.494639 http://www.ddmd.io/mio/hasValue 2024-10-03T16:11:04.494639
http://dome40.eu/semantics/dome4.0_core#web_platform http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#web_platform
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://dome40.eu/semantics/dome4.0_core#/deac7486-443e-4562-bf46-8dac13fdb214
http://dome40.eu/semantics/dome4.0_core#data_creator http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#data_creator
http://www.w3.org/2002/07/owl#Class http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2002/07/owl#Class
CC-BY 4.0 http://www.ddmd.io/mio/hasValue CC-BY 4.0
environmental engineering http://www.w3.org/2000/01/rdf-schema#label environmental engineering
http://dome40.eu/semantics/dome4.0_core#issued_date http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#issued_date
Dome Data Set http://www.w3.org/2000/01/rdf-schema#label Dome Data Set
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://data.europa.eu/8mn/euroscivoc/14e75836-6f05-46f9-9c82-ca12468b0452
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://dome40.eu/semantics/dome4.0_core#/bc845dd9-c77a-458a-aea6-57408c488588
http://dome40.eu/semantics/dome4.0_core#license http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#license
This is a description that will change later http://www.ddmd.io/mio/hasValue This is a description that will change later
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://dome40.eu/semantics/dome4.0_core#/f41305a4-6862-419c-96ae-ab685aef22b4
http://dome40.eu/semantics/dome4.0_core#description http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#description
http://dome40.eu/semantics/dome4.0_core#web_platform http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#web_platform
http://dome40.eu/semantics/dome4.0_core#syntactic_keyword http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#syntactic_keyword
http://dome40.eu/semantics/dome4.0_core#data_publisher http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#data_publisher
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://dome40.eu/semantics/dome4.0_core#/ad874460-c0b2-4457-b200-3b899b762cf4
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://dome40.eu/semantics/dome4.0_core#/e56f921c-883f-44c3-bf90-f4af5713b06a
http://dome40.eu/semantics/dome4.0_core#title http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#title
Company 1 http://www.ddmd.io/mio/hasValue Company 1
http://dome40.eu/semantics/dome4.0_core#DS_2 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#data_set
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart https://next-gen.materialsproject.org/materials/mp-91
http://dome40.eu/semantics/dome4.0_core#semantic_keyword http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#semantic_keyword
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://dome40.eu/semantics/dome4.0_core#/1b77a25d-2402-44d1-80d6-b5454f7b3fef
http://dome40.eu/semantics/dome4.0_core#DS_2 http://dome40.eu/semantics/dome4.0_core#hasPart http://data.europa.eu/8mn/euroscivoc/531bd18a-eedd-4345-8b2f-5464f96615f8
http://dome40.eu/semantics/dome4.0_core#data_publisher http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#data_publisher
http://dome40.eu/semantics/dome4.0_core#title http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#title
http://dome40.eu/semantics/dome4.0_core#license http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#license
http://dome40.eu/semantics/dome4.0_core#description http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#description
http://www.ddmd.io/mio/SDS http://www.w3.org/2000/01/rdf-schema#subClassOf http://www.ddmd.io/mio/SDS
A dome specific representation of a Semantic Data Set  http://www.w3.org/2000/01/rdf-schema#comment A dome specific representation of a Semantic Data Set 
http://dome40.eu/semantics/dome4.0_core#semantic_keyword http://www.ddmd.io/mio/hasPart http://dome40.eu/semantics/dome4.0_core#semantic_keyword
http://dome40.eu/semantics/dome4.0_core#URI http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#URI
http://dome40.eu/semantics/dome4.0_core#data_creator http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dome40.eu/semantics/dome4.0_core#data_creator
In [29]:
vis(DS99)
No description has been provided for this image
In [30]:
q = """
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX domeES: <http://dome40.eu/semantics/dome4.0_core#> 

    SELECT ?s ?p ?o ?oLabel
    WHERE {
        ?s ?p ?o .
        ?o rdfs:label ?oLabel .    
        ?o rdfs:label "medical engineering" .
        }
"""
In [31]:
r=gc.query(q)
In [32]:
for i in r:
    print(i)
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